Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015927047.1_cds_XP_016474935.1_66914
CDS Infomation

[gene=LOC107796658] [db_xref=GeneID:107796658] [protein=shikimate O-hydroxycinnamoyltransferase] [protein_id=XP_016474935.1] [location=complement(join(51868..52767,56795..57202))] [gbkey=CDS]
Sequence

ATGAAGATCGAAGTGAAAGAATCAACGATGGTAAAGCCGGCGGCGGAGACGCCACAACAG
AGGCTGTGGAACTCTAATGTGGATTTGGTGGTGCCGAATTTCCACACGCCAAGTGTTTAT
TTTTACAGGCCGACGGGATCCCCAAATTTCTTCGACGGAAAAGTGCTGAAGGAAGCTCTA
AGCAAAGCACTTGTGCCGTTTTATCCTATGGCGGGGAGGCTGTGTAGGGACGAAGATGGT
CGTATTGAGATTGACTGTAAAGGTCAGGGGGTGCTTTTTGTGGAAGCTGAGTCGGATGGT
GTGGTGGATGATTTTGGTGATTTTGCCCCGACGTTAGAACTCCGTCAACTCATCCCCGCC
GTTGATTACTCACAAGGAATTCAATCGTATGCTCTCTTAGTGTTGCAGATAACACATTTT
AAATGTGGGGGAGTTTCCCTTGGTGTGGGCATGCAACATCATGCAGCAGATGGAGCTTCT
GGTCTTCACTTCATCAACACATGGTCTGATATGGCTCGTGGTCTGGACCTCACCATCCCA
CCTTTCATTGACCGGACCCTCCTCCGTGCTCGTGATCCACCTCAGCCTCAGTTTCCCCAT
GTCGAGTACCAGCCACCTCCCACTCTCAAGGTAACTCCAGAAAACACCCCTATATCTGAA
GCTGTTCCTGAAACCAGCGTGTCCATCTTCAAATTAACCCGTGATCAAATCAATACCCTC
AAAGCGAAGTCCAAGGAAGATGGAAATACCGTTAACTACAGCTCCTACGAGATGTTGGCA
GGACATGTGTGGCGCTCCACGTGCATGGCACGAGGACTCGCTCATGATCAAGAAACCAAA
TTGTACATAGCAACAGATGGACGTTCCAGGCTTCGGCCCTCTCTCCCACCAGGCTATTTC
GGTAATGTGATATTTACTACCACTCCTATTGCAGTCGCAGGTGATATCCAATCGAAGCCT
ATTTGGTATGCTGCCAGTAAATTACATGATGCATTGGCTAGAATGGACAACGATTACTTA
AGATCAGCTCTTGATTATTTGGAGTTGCAGCCTGACTTAAAGGCTCTTGTTCGTGGTGCA
CATACGTTTAAGTGCCCGAATTTAGGAATAACTAGTTGGTCTAGGCTGCCAATCCATGAT
GCTGATTTTGGCTGGGGTAGGCCTATATTTATGGGACCTGGTGGTATTGCTTATGAAGGT
TTAAGCTTTATATTGCCAAGTCCTACAAATGATGGCAGTCAATCTGTTGCAATCTCTCTA
CAAGCAGAACACATGAAACTTTTCGAGAAGTTCTTGTATGACTTTTGA

Peptide Sequence

PEP ID

XP_016474935.1
PEP Infomation

PREDICTED: shikimate O-hydroxycinnamoyltransferase [Nicotiana tabacum]
Sequence

MKIEVKESTMVKPAAETPQQRLWNSNVDLVVPNFHTPSVYFYRPTGSPNFFDGKVLKEAL
SKALVPFYPMAGRLCRDEDGRIEIDCKGQGVLFVEAESDGVVDDFGDFAPTLELRQLIPA
VDYSQGIQSYALLVLQITHFKCGGVSLGVGMQHHAADGASGLHFINTWSDMARGLDLTIP
PFIDRTLLRARDPPQPQFPHVEYQPPPTLKVTPENTPISEAVPETSVSIFKLTRDQINTL
KAKSKEDGNTVNYSSYEMLAGHVWRSTCMARGLAHDQETKLYIATDGRSRLRPSLPPGYF
GNVIFTTTPIAVAGDIQSKPIWYAASKLHDALARMDNDYLRSALDYLELQPDLKALVRGA
HTFKCPNLGITSWSRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSQSVAISL
QAEHMKLFEKFLYDF

Transcript Sequence

Gene sequence data has not been registered.